Index

_

__call__() (Docorator method) (ModelWrapper method)

A

ad_dif() (in module openpnm.models.physics.ad_dif_conductance) add() (TypedSet method) add_boundary_pores() (BodyCenteredCubic method) (Cubic method) (Demo method) (FaceCenteredCubic method) (in module openpnm.topotools) add_comp() (BinaryGas method) (GasMixture method) (LiquidMixture method) (Mixture method) (StandardGasMixture method) (StandardLiquidMixture method) add_model() (Air method) (BinaryGas method) (BodyCenteredCubic method) (Cubic method) (CubicTemplate method) (Delaunay method) (DelaunayVoronoiDual method) (Demo method) (Domain method) (FaceCenteredCubic method) (GasMixture method) (LiquidMixture method) (Mercury method) (Mixture method) (ModelsMixin2 method) (MultiPhase method) (Network method) (Phase method) (Species method) (StandardGas method) (StandardGasMixture method) (StandardLiquid method) (StandardLiquidMixture method) (Voronoi method) (Water method)

add_model_collection() (Air method) (BinaryGas method) (BodyCenteredCubic method) (Cubic method) (CubicTemplate method) (Delaunay method) (DelaunayVoronoiDual method) (Demo method) (Domain method) (FaceCenteredCubic method) (GasMixture method) (LiquidMixture method) (Mercury method) (Mixture method) (ModelsMixin2 method) (MultiPhase method) (Network method) (Phase method) (Species method) (StandardGas method) (StandardGasMixture method) (StandardLiquid method) (StandardLiquidMixture method) (Voronoi method) (Water method) add_phases() (MultiPhase method) add_reservoir_pore() (in module openpnm.topotools) AdvectionDiffusion (class in openpnm.algorithms) Air (class in openpnm.phase) air (in module openpnm.models.collections.phase) Algorithm (class in openpnm.algorithms) append() (PrintableList method) (Project method) (TypedList method) apply_trapping() (Drainage method) (InvasionPercolation method)

B

Base2 (class in openpnm.core) BaseSolver (class in openpnm.solvers) basic (in module openpnm.models.collections.physics) bidirectional_throats() (in module openpnm.models.network) BinaryGas (class in openpnm.phase)

blank() (in module openpnm.models.misc) BodyCenteredCubic (class in openpnm.network) bond_percolation() (in module openpnm.topotools) butler_volmer_conc() (in module openpnm.models.physics.source_terms) butler_volmer_voltage() (in module openpnm.models.physics.source_terms)

C

check_data_health() (in module openpnm.utils) check_mixture_health() (BinaryGas method) (GasMixture method) (LiquidMixture method) (Mixture method) (StandardGasMixture method) (StandardLiquidMixture method) check_network_health() (in module openpnm.utils) chemicals_wrapper() (in module openpnm.models.phase) circle() (in module openpnm.models.geometry.pore_cross_sectional_area) (in module openpnm.models.geometry.pore_surface_area) (in module openpnm.models.geometry.pore_volume) circles_and_rectangles (in module openpnm.models.collections.geometry) circles_and_rectangles() (in module openpnm.models.geometry.conduit_lengths) (in module openpnm.models.geometry.diffusive_size_factors) (in module openpnm.models.geometry.hydraulic_size_factors) (in module openpnm.models.geometry.throat_length) clear() (AdvectionDiffusion method) (Air method) (Algorithm method) (Base2 method) (BinaryGas method) (BodyCenteredCubic method) (Cubic method) (CubicTemplate method) (Delaunay method) (DelaunayVoronoiDual method) (Demo method) (Domain method) (Drainage method) (FaceCenteredCubic method) (FickianDiffusion method) (FourierConduction method) (GasMixture method) (HealthDict method) (InvasionPercolation method) (LiquidMixture method) (Mercury method) (Mixture method) (ModelsDict method) (ModelWrapper method) (MultiPhase method) (NestedDict method) (Network method) (OhmicConduction method) (Phase method) (PrintableDict method) (PrintableList method) (Project method) (ReactiveTransport method) (Species method) (StandardGas method) (StandardGasMixture method) (StandardLiquid method) (StandardLiquidMixture method) (StokesFlow method) (TransientAdvectionDiffusion method) (TransientFickianDiffusion method) (TransientFourierConduction method) (TransientMultiPhysics method) (TransientReactiveTransport method) (Transport method) (TypedList method) (TypedSet method) (Voronoi method) (Water method) (Workspace method) clear_BCs() (AdvectionDiffusion method) (Algorithm method) (Drainage method) (FickianDiffusion method) (FourierConduction method) (InvasionPercolation method) (OhmicConduction method) (ReactiveTransport method) (StokesFlow method) (TransientAdvectionDiffusion method) (TransientFickianDiffusion method) (TransientFourierConduction method) (TransientMultiPhysics method) (TransientReactiveTransport method) (Transport method) clear_rate_BCs() (AdvectionDiffusion method) (FickianDiffusion method) (FourierConduction method) (OhmicConduction method) (ReactiveTransport method) (StokesFlow method) (TransientAdvectionDiffusion method) (TransientFickianDiffusion method) (TransientFourierConduction method) (TransientReactiveTransport method) (Transport method) clear_value_BCs() (AdvectionDiffusion method) (FickianDiffusion method) (FourierConduction method) (OhmicConduction method) (ReactiveTransport method) (StokesFlow method) (TransientAdvectionDiffusion method) (TransientFickianDiffusion method) (TransientFourierConduction method) (TransientReactiveTransport method) (Transport method) clip() (in module openpnm.models.misc)

clone_pores() (in module openpnm.topotools) close_project() (Workspace method) cluster_number() (in module openpnm.models.network) cluster_size() (in module openpnm.models.network) conduit_conductance() (in module openpnm.models.physics.multiphase) cone() (in module openpnm.models.geometry.pore_cross_sectional_area) cones_and_cylinders (in module openpnm.models.collections.geometry) cones_and_cylinders() (in module openpnm.models.geometry.conduit_lengths) (in module openpnm.models.geometry.diffusive_size_factors) (in module openpnm.models.geometry.hydraulic_size_factors) (in module openpnm.models.geometry.throat_length) connect_pores() (in module openpnm.topotools) conns_to_am() (in module openpnm.topotools) constant() (in module openpnm.models.misc) coordination_number() (in module openpnm.models.network) copy() (AdvectionDiffusion method) (Air method) (Algorithm method) (Base2 method) (BinaryGas method) (BodyCenteredCubic method) (Cubic method) (CubicTemplate method) (Delaunay method) (DelaunayVoronoiDual method) (Demo method) (Domain method) (Drainage method) (FaceCenteredCubic method) (FickianDiffusion method) (FourierConduction method) (GasMixture method) (HealthDict method) (InvasionPercolation method) (LiquidMixture method) (Mercury method) (Mixture method) (ModelsDict method) (ModelWrapper method) (MultiPhase method) (NestedDict method) (Network method) (OhmicConduction method) (Phase method) (PrintableDict method) (PrintableList method) (Project method) (ReactiveTransport method) (Species method) (StandardGas method) (StandardGasMixture method) (StandardLiquid method) (StandardLiquidMixture method) (StokesFlow method) (TransientAdvectionDiffusion method) (TransientFickianDiffusion method) (TransientFourierConduction method) (TransientMultiPhysics method) (TransientReactiveTransport method) (Transport method) (TypedList method) (TypedSet method) (Voronoi method) (Water method) (Workspace method) copy_project() (Workspace method) count() (PrintableList method) (Project method) (TypedList method) count_coincident_pores() (in module openpnm.models.network) create_adjacency_matrix() (BodyCenteredCubic method) (Cubic method) (CubicTemplate method) (Delaunay method) (DelaunayVoronoiDual method) (Demo method) (FaceCenteredCubic method) (Network method) (Voronoi method) create_incidence_matrix() (BodyCenteredCubic method) (Cubic method) (CubicTemplate method) (Delaunay method) (DelaunayVoronoiDual method) (Demo method) (FaceCenteredCubic method) (Network method) (Voronoi method) cube() (in module openpnm.models.geometry.pore_cross_sectional_area) (in module openpnm.models.geometry.pore_surface_area) (in module openpnm.models.geometry.pore_volume) cubes_and_cuboids (in module openpnm.models.collections.geometry) cubes_and_cuboids() (in module openpnm.models.geometry.conduit_lengths) (in module openpnm.models.geometry.diffusive_size_factors) (in module openpnm.models.geometry.hydraulic_size_factors) (in module openpnm.models.geometry.throat_length) Cubic (class in openpnm.network) CubicTemplate (class in openpnm.network) cuboid() (in module openpnm.models.geometry.throat_cross_sectional_area) (in module openpnm.models.geometry.throat_perimeter) (in module openpnm.models.geometry.throat_surface_area) (in module openpnm.models.geometry.throat_volume) cylinder() (in module openpnm.models.geometry.throat_cross_sectional_area) (in module openpnm.models.geometry.throat_perimeter) (in module openpnm.models.geometry.throat_surface_area) (in module openpnm.models.geometry.throat_volume)

D

dedent() (Docorator method) dedents() (Docorator method) Delaunay (class in openpnm.network) DelaunayVoronoiDual (class in openpnm.network) delete_kwargs() (Docorator method) delete_kwargs_s() (Docorator class method) delete_params() (Docorator method) delete_params_s() (Docorator static method) delete_types() (Docorator method) delete_types_s() (Docorator static method) Demo (class in openpnm.network) dependency_graph() (ModelsDict method) dependency_list() (ModelsDict method) dependency_map() (ModelsDict method) dict_to_struct() (in module openpnm.utils)

difference() (in module openpnm.models.misc) (TypedSet method) difference_update() (TypedSet method) dimensionality() (in module openpnm.topotools) DirectSolver (class in openpnm.solvers) discard() (TypedSet method) distance_to_furthest_neighbor() (in module openpnm.models.network) distance_to_nearest_neighbor() (in module openpnm.models.network) distance_to_nearest_pore() (in module openpnm.models.network) Docorator (class in openpnm.utils) Domain (class in openpnm.core) Drainage (class in openpnm.algorithms) draw_conduit() (in module openpnm.visualization) drop_sites() (in module openpnm.topotools) duplicate_throats() (in module openpnm.models.network)

E

effective() (in module openpnm.models.geometry.pore_volume) equivalent_diameter() (in module openpnm.models.geometry.pore_size) (in module openpnm.models.geometry.throat_size) exponential() (in module openpnm.models.physics.source_terms) extend() (in module openpnm.topotools) (PrintableList method) (Project method) (TypedList method)

extrusion() (in module openpnm.models.geometry.throat_surface_area) (in module openpnm.models.geometry.throat_volume)

F

FaceCenteredCubic (class in openpnm.network) FickianDiffusion (class in openpnm.algorithms) filter_by_label() (AdvectionDiffusion method) (Air method) (Algorithm method) (BinaryGas method) (BodyCenteredCubic method) (Cubic method) (CubicTemplate method) (Delaunay method) (DelaunayVoronoiDual method) (Demo method) (Domain method) (Drainage method) (FaceCenteredCubic method) (FickianDiffusion method) (FourierConduction method) (GasMixture method) (InvasionPercolation method) (LabelMixin method) (LiquidMixture method) (Mercury method) (Mixture method) (MultiPhase method) (Network method) (OhmicConduction method) (Phase method) (ReactiveTransport method) (Species method) (StandardGas method) (StandardGasMixture method) (StandardLiquid method) (StandardLiquidMixture method) (StokesFlow method) (TransientAdvectionDiffusion method) (TransientFickianDiffusion method) (TransientFourierConduction method) (TransientMultiPhysics method) (TransientReactiveTransport method) (Transport method) (Voronoi method) (Water method) filter_pores_by_z() (in module openpnm.topotools) find_clusters() (in module openpnm.topotools) find_coincident_pores() (in module openpnm.models.network) find_connected_pores() (BodyCenteredCubic method) (Cubic method) (CubicTemplate method) (Delaunay method) (DelaunayVoronoiDual method) (Demo method) (FaceCenteredCubic method) (Network method) (Voronoi method) find_connected_sites() (in module openpnm.topotools) find_connecting_bonds() (in module openpnm.topotools) find_connecting_throat() (BodyCenteredCubic method) (Cubic method) (CubicTemplate method) (Delaunay method) (DelaunayVoronoiDual method) (Demo method) (FaceCenteredCubic method) (Network method) (Voronoi method) find_interface_throats() (in module openpnm.topotools) find_isolated_clusters() (in module openpnm.topotools) find_nearby_pores() (BodyCenteredCubic method) (Cubic method) (CubicTemplate method) (Delaunay method) (DelaunayVoronoiDual method) (Demo method) (FaceCenteredCubic method) (Network method) (Voronoi method) find_neighbor_bonds() (in module openpnm.topotools)

find_neighbor_pores() (BodyCenteredCubic method) (Cubic method) (CubicTemplate method) (Delaunay method) (DelaunayVoronoiDual method) (Demo method) (FaceCenteredCubic method) (Network method) (Voronoi method) find_neighbor_sites() (in module openpnm.topotools) find_neighbor_throats() (BodyCenteredCubic method) (Cubic method) (CubicTemplate method) (Delaunay method) (DelaunayVoronoiDual method) (Demo method) (FaceCenteredCubic method) (Network method) (Voronoi method) find_path() (in module openpnm.topotools) find_pore_hulls() (DelaunayVoronoiDual method) find_surface_pores() (in module openpnm.topotools) find_throat_facets() (DelaunayVoronoiDual method) flat_list() (in module openpnm.utils) FourierConduction (class in openpnm.algorithms) fraction() (in module openpnm.models.misc) from_component() (in module openpnm.models.phase.mixtures) from_neighbor_pores() (in module openpnm.models.geometry.throat_seed) (in module openpnm.models.geometry.throat_size) (in module openpnm.models.misc) from_neighbor_throats() (in module openpnm.models.geometry.pore_size) (in module openpnm.models.misc) fromkeys() (AdvectionDiffusion method) (Air method) (Algorithm method) (Base2 method) (BinaryGas method) (BodyCenteredCubic method) (Cubic method) (CubicTemplate method) (Delaunay method) (DelaunayVoronoiDual method) (Demo method) (Domain method) (Drainage method) (FaceCenteredCubic method) (FickianDiffusion method) (FourierConduction method) (GasMixture method) (HealthDict method) (InvasionPercolation method) (LiquidMixture method) (Mercury method) (Mixture method) (ModelsDict method) (ModelWrapper method) (MultiPhase method) (NestedDict method) (Network method) (OhmicConduction method) (Phase method) (PrintableDict method) (ReactiveTransport method) (Species method) (StandardGas method) (StandardGasMixture method) (StandardLiquid method) (StandardLiquidMixture method) (StokesFlow method) (TransientAdvectionDiffusion method) (TransientFickianDiffusion method) (TransientFourierConduction method) (TransientMultiPhysics method) (TransientReactiveTransport method) (Transport method) (Voronoi method) (Water method) (Workspace method)

G

gabriel_edges() (in module openpnm.models.network) gas_mixture_ce() (in module openpnm.models.phase.diffusivity) gas_mixture_fesg() (in module openpnm.models.phase.diffusivity) gas_mixture_hz() (in module openpnm.models.phase.viscosity) gas_mixture_whz() (in module openpnm.models.phase.thermal_conductivity) gas_mixture_yweighted() (in module openpnm.models.phase.heat_capacity) gas_pure_gesmr() (in module openpnm.models.phase.viscosity) gas_pure_gismr() (in module openpnm.models.phase.thermal_conductivity) gas_pure_st() (in module openpnm.models.phase.viscosity) gas_pure_TRC() (in module openpnm.models.phase.heat_capacity) gaseous_species_in_water() (in module openpnm.models.phase.partition_coefficient) GasMixture (class in openpnm.phase) general_symbolic() (in module openpnm.models.physics.source_terms) general_toroidal() (in module openpnm.models.physics.meniscus) generate_base_points() (in module openpnm.topotools) generate_voxel_image() (in module openpnm.visualization) generic_diffusive() (in module openpnm.models.physics.diffusive_conductance) generic_distribution() (in module openpnm.models.geometry.pore_size) (in module openpnm.models.geometry.throat_size) (in module openpnm.models.misc) generic_electrical() (in module openpnm.models.physics.electrical_conductance) generic_function() (in module openpnm.models.misc) generic_hydraulic() (in module openpnm.models.physics.hydraulic_conductance) generic_thermal() (in module openpnm.models.physics.thermal_conductance) get() (AdvectionDiffusion method) (Air method) (Algorithm method) (Base2 method) (BinaryGas method) (BodyCenteredCubic method) (Cubic method) (CubicTemplate method) (Delaunay method) (DelaunayVoronoiDual method) (Demo method) (Domain method) (Drainage method) (FaceCenteredCubic method) (FickianDiffusion method) (FourierConduction method) (GasMixture method) (HealthDict method) (InvasionPercolation method) (LiquidMixture method) (Mercury method) (Mixture method) (ModelsDict method) (ModelWrapper method) (MultiPhase method) (NestedDict method) (Network method) (OhmicConduction method) (Phase method) (PrintableDict method) (ReactiveTransport method) (Species method) (StandardGas method) (StandardGasMixture method) (StandardLiquid method) (StandardLiquidMixture method) (StokesFlow method) (TransientAdvectionDiffusion method) (TransientFickianDiffusion method) (TransientFourierConduction method) (TransientMultiPhysics method) (TransientReactiveTransport method) (Transport method) (Voronoi method) (Water method) (Workspace method) get_adjacency_matrix() (BodyCenteredCubic method) (Cubic method) (CubicTemplate method) (Delaunay method) (DelaunayVoronoiDual method) (Demo method) (FaceCenteredCubic method) (Network method) (Voronoi method)

get_comp_vals() (BinaryGas method) (GasMixture method) (LiquidMixture method) (Mixture method) (StandardGasMixture method) (StandardLiquidMixture method) get_conduit_data() (AdvectionDiffusion method) (Air method) (Algorithm method) (Base2 method) (BinaryGas method) (BodyCenteredCubic method) (Cubic method) (CubicTemplate method) (Delaunay method) (DelaunayVoronoiDual method) (Demo method) (Domain method) (Drainage method) (FaceCenteredCubic method) (FickianDiffusion method) (FourierConduction method) (GasMixture method) (InvasionPercolation method) (LiquidMixture method) (Mercury method) (Mixture method) (MultiPhase method) (Network method) (OhmicConduction method) (Phase method) (ReactiveTransport method) (Species method) (StandardGas method) (StandardGasMixture method) (StandardLiquid method) (StandardLiquidMixture method) (StokesFlow method) (TransientAdvectionDiffusion method) (TransientFickianDiffusion method) (TransientFourierConduction method) (TransientMultiPhysics method) (TransientReactiveTransport method) (Transport method) (Voronoi method) (Water method) get_docstring() (Docorator method) get_domain_area() (in module openpnm.topotools) get_domain_length() (in module openpnm.topotools) get_extended_summary() (Docorator method) get_extended_summaryf() (Docorator method) get_full_description() (Docorator method) get_full_descriptionf() (Docorator method) get_incidence_matrix() (BodyCenteredCubic method) (Cubic method) (CubicTemplate method) (Delaunay method) (DelaunayVoronoiDual method) (Demo method) (FaceCenteredCubic method) (Network method) (Voronoi method) get_mix_vals() (BinaryGas method) (GasMixture method) (LiquidMixture method) (Mixture method) (StandardGasMixture method) (StandardLiquidMixture method) get_mixture_model_args() (in module openpnm.utils) get_printable_labels() (in module openpnm.utils) get_printable_props() (in module openpnm.utils) get_sections() (Docorator method) get_sectionsf() (Docorator method) get_shape() (in module openpnm.topotools) get_spacing() (in module openpnm.topotools) get_summary() (Docorator method) get_summaryf() (Docorator method)

H

hagen_poiseuille() (in module openpnm.models.physics.hydraulic_conductance) headless_throats() (in module openpnm.models.network) HealthDict (class in openpnm.utils) hull_centroid() (in module openpnm.topotools) hybrid_cones_and_cylinders() (in module openpnm.models.geometry.conduit_lengths) (in module openpnm.models.geometry.diffusive_size_factors) (in module openpnm.models.geometry.hydraulic_size_factors) (in module openpnm.models.geometry.throat_length)

hybrid_pyramids_and_cuboids() (in module openpnm.models.geometry.conduit_lengths) (in module openpnm.models.geometry.diffusive_size_factors) (in module openpnm.models.geometry.hydraulic_size_factors) (in module openpnm.models.geometry.throat_length) hybrid_trapezoids_and_rectangles() (in module openpnm.models.geometry.conduit_lengths) (in module openpnm.models.geometry.diffusive_size_factors) (in module openpnm.models.geometry.hydraulic_size_factors) (in module openpnm.models.geometry.throat_length)

I

ideal_gas() (in module openpnm.models.phase.density) ignore_warnings() (in module openpnm.utils) index() (PrintableList method) (Project method) (TypedList method) insert() (PrintableList method) (Project method) (TypedList method) Integrator (class in openpnm.integrators) interpolate_data() (AdvectionDiffusion method) (Air method) (Algorithm method) (Base2 method) (BinaryGas method) (BodyCenteredCubic method) (Cubic method) (CubicTemplate method) (Delaunay method) (DelaunayVoronoiDual method) (Demo method) (Domain method) (Drainage method) (FaceCenteredCubic method) (FickianDiffusion method) (FourierConduction method) (GasMixture method) (InvasionPercolation method) (LiquidMixture method) (Mercury method) (Mixture method) (MultiPhase method) (Network method) (OhmicConduction method) (Phase method) (ReactiveTransport method) (Species method) (StandardGas method) (StandardGasMixture method) (StandardLiquid method) (StandardLiquidMixture method) (StokesFlow method) (TransientAdvectionDiffusion method) (TransientFickianDiffusion method) (TransientFourierConduction method) (TransientMultiPhysics method) (TransientReactiveTransport method) (Transport method) (Voronoi method) (Water method) intersecting_cones() (in module openpnm.models.geometry.conduit_lengths) (in module openpnm.models.geometry.diffusive_size_factors) (in module openpnm.models.geometry.hydraulic_size_factors) (in module openpnm.models.geometry.throat_length) intersecting_pyramids() (in module openpnm.models.geometry.conduit_lengths) (in module openpnm.models.geometry.diffusive_size_factors) (in module openpnm.models.geometry.hydraulic_size_factors) (in module openpnm.models.geometry.throat_length) intersecting_trapezoids() (in module openpnm.models.geometry.conduit_lengths) (in module openpnm.models.geometry.diffusive_size_factors) (in module openpnm.models.geometry.hydraulic_size_factors) (in module openpnm.models.geometry.throat_length) intersection() (TypedSet method) intersection_update() (TypedSet method)

InvasionPercolation (class in openpnm.algorithms) invert() (in module openpnm.models.misc) is_fully_connected() (in module openpnm.topotools) is_symmetric() (in module openpnm.utils) is_transient() (in module openpnm.utils) is_valid_propname() (in module openpnm.utils) iscoplanar() (in module openpnm.topotools) isdisjoint() (TypedSet method) isolated_pores() (in module openpnm.models.network) isoutside() (in module openpnm.topotools) ispercolating() (in module openpnm.topotools) issubset() (TypedSet method) issuperset() (TypedSet method) issymmetric() (in module openpnm.topotools) istriangular() (in module openpnm.topotools) istril() (in module openpnm.topotools) istriu() (in module openpnm.topotools) items() (AdvectionDiffusion method) (Air method) (Algorithm method) (Base2 method) (BinaryGas method) (BodyCenteredCubic method) (Cubic method) (CubicTemplate method) (Delaunay method) (DelaunayVoronoiDual method) (Demo method) (Domain method) (Drainage method) (FaceCenteredCubic method) (FickianDiffusion method) (FourierConduction method) (GasMixture method) (HealthDict method) (InvasionPercolation method) (LiquidMixture method) (Mercury method) (Mixture method) (ModelsDict method) (ModelWrapper method) (MultiPhase method) (NestedDict method) (Network method) (OhmicConduction method) (Phase method) (PrintableDict method) (ReactiveTransport method) (Species method) (StandardGas method) (StandardGasMixture method) (StandardLiquid method) (StandardLiquidMixture method) (StokesFlow method) (TransientAdvectionDiffusion method) (TransientFickianDiffusion method) (TransientFourierConduction method) (TransientMultiPhysics method) (TransientReactiveTransport method) (Transport method) (Voronoi method) (Water method) (Workspace method) IterativeSolver (class in openpnm.solvers)

J

jenkins_rao() (in module openpnm.models.geometry.throat_capillary_shape_factor)

K

keep_params() (Docorator method) keep_params_s() (Docorator static method) keep_types() (Docorator method) keep_types_s() (Docorator static method) keys() (AdvectionDiffusion method) (Air method) (Algorithm method) (Base2 method) (BinaryGas method) (BodyCenteredCubic method) (Cubic method) (CubicTemplate method) (Delaunay method) (DelaunayVoronoiDual method) (Demo method) (Domain method) (Drainage method) (FaceCenteredCubic method) (FickianDiffusion method) (FourierConduction method) (GasMixture method) (HealthDict method) (InvasionPercolation method) (LiquidMixture method) (Mercury method) (Mixture method) (ModelsDict method) (ModelWrapper method) (MultiPhase method) (NestedDict method) (Network method) (OhmicConduction method) (Phase method) (PrintableDict method) (ReactiveTransport method) (Species method) (StandardGas method) (StandardGasMixture method) (StandardLiquid method) (StandardLiquidMixture method) (StokesFlow method) (TransientAdvectionDiffusion method) (TransientFickianDiffusion method) (TransientFourierConduction method) (TransientMultiPhysics method) (TransientReactiveTransport method) (Transport method) (Voronoi method) (Water method) (Workspace method)

L

label_faces() (in module openpnm.topotools) LabelMixin (class in openpnm.core) labels() (AdvectionDiffusion method) (Air method) (Algorithm method) (BinaryGas method) (BodyCenteredCubic method) (Cubic method) (CubicTemplate method) (Delaunay method) (DelaunayVoronoiDual method) (Demo method) (Domain method) (Drainage method) (FaceCenteredCubic method) (FickianDiffusion method) (FourierConduction method) (GasMixture method) (InvasionPercolation method) (LabelMixin method) (LiquidMixture method) (Mercury method) (Mixture method) (MultiPhase method) (Network method) (OhmicConduction method) (Phase method) (ReactiveTransport method) (Species method) (StandardGas method) (StandardGasMixture method) (StandardLiquid method) (StandardLiquidMixture method) (StokesFlow method) (TransientAdvectionDiffusion method) (TransientFickianDiffusion method) (TransientFourierConduction method) (TransientMultiPhysics method) (TransientReactiveTransport method) (Transport method) (Voronoi method) (Water method)

largest_sphere() (in module openpnm.models.geometry.pore_size) late_filling() (in module openpnm.models.physics.multiphase) lens() (in module openpnm.models.geometry.throat_volume) linear() (in module openpnm.models.misc) (in module openpnm.models.physics.source_terms) liquid_mixture_COSTALD() (in module openpnm.models.phase.density) liquid_mixture_DIPPR9H() (in module openpnm.models.phase.thermal_conductivity) liquid_mixture_tc() (in module openpnm.models.phase.diffusivity) liquid_mixture_wsd() (in module openpnm.models.phase.surface_tension) liquid_mixture_xweighted() (in module openpnm.models.phase.heat_capacity) (in module openpnm.models.phase.viscosity) liquid_pure_antoine() (in module openpnm.models.phase.vapor_pressure) liquid_pure_bb() (in module openpnm.models.phase.surface_tension) liquid_pure_COSTALD() (in module openpnm.models.phase.density) liquid_pure_gismr() (in module openpnm.models.phase.thermal_conductivity) liquid_pure_lk() (in module openpnm.models.phase.vapor_pressure) liquid_pure_ls() (in module openpnm.models.phase.viscosity) liquid_pure_rp() (in module openpnm.models.phase.heat_capacity) liquid_pure_sr() (in module openpnm.models.phase.thermal_conductivity) LiquidMixture (class in openpnm.phase) load_project() (Workspace method) load_workspace() (Workspace method) logarithm() (in module openpnm.models.physics.source_terms) looped_throats() (in module openpnm.models.network)

M

mason_morrow() (in module openpnm.models.geometry.throat_capillary_shape_factor) mass_to_molar() (in module openpnm.models.phase.density) match_histogram() (in module openpnm.models.misc) Mercury (class in openpnm.phase) mercury (in module openpnm.models.collections.phase) merge_networks() (in module openpnm.topotools) merge_pores() (in module openpnm.topotools) methods_to_table() (in module openpnm.utils) mix_and_match() (in module openpnm.models.phase.misc) mixed_diffusion() (in module openpnm.models.physics.diffusive_conductance) mixing_rule() (in module openpnm.models.phase.mixtures) Mixture (class in openpnm.phase) models_to_table() (in module openpnm.utils) ModelsDict (class in openpnm.core) ModelsMixin2 (class in openpnm.core) ModelWrapper (class in openpnm.core) module openpnm, [1] openpnm.algorithms openpnm.contrib openpnm.core openpnm.integrators openpnm.io openpnm.models openpnm.models.collections openpnm.models.collections.geometry openpnm.models.collections.network openpnm.models.collections.phase openpnm.models.collections.phase.gas openpnm.models.collections.phase.liquid openpnm.models.collections.physics openpnm.models.geometry openpnm.models.geometry.conduit_lengths openpnm.models.geometry.diffusive_size_factors openpnm.models.geometry.hydraulic_size_factors openpnm.models.geometry.pore_cross_sectional_area openpnm.models.geometry.pore_seed openpnm.models.geometry.pore_size openpnm.models.geometry.pore_surface_area openpnm.models.geometry.pore_volume openpnm.models.geometry.throat_capillary_shape_factor openpnm.models.geometry.throat_centroid openpnm.models.geometry.throat_cross_sectional_area openpnm.models.geometry.throat_endpoints openpnm.models.geometry.throat_length openpnm.models.geometry.throat_perimeter openpnm.models.geometry.throat_seed openpnm.models.geometry.throat_size openpnm.models.geometry.throat_surface_area openpnm.models.geometry.throat_vector openpnm.models.geometry.throat_volume openpnm.models.misc openpnm.models.network openpnm.models.phase openpnm.models.phase.critical_props openpnm.models.phase.density openpnm.models.phase.diffusivity openpnm.models.phase.heat_capacity openpnm.models.phase.misc openpnm.models.phase.mixtures openpnm.models.phase.partition_coefficient openpnm.models.phase.surface_tension openpnm.models.phase.thermal_conductivity openpnm.models.phase.vapor_pressure openpnm.models.phase.viscosity openpnm.models.physics openpnm.models.physics.ad_dif_conductance openpnm.models.physics.capillary_pressure openpnm.models.physics.diffusive_conductance openpnm.models.physics.electrical_conductance openpnm.models.physics.hydraulic_conductance openpnm.models.physics.meniscus openpnm.models.physics.multiphase openpnm.models.physics.source_terms openpnm.models.physics.thermal_conductance openpnm.network openpnm.phase openpnm.solvers openpnm.topotools openpnm.utils openpnm.visualization

mole_summation() (in module openpnm.models.phase.mixtures) mole_to_mass_fraction() (in module openpnm.models.phase.misc) (in module openpnm.models.phase.mixtures) MultiPhase (class in openpnm.contrib) multiphase_diffusion() (in module openpnm.contrib)

N

natural_exponential() (in module openpnm.models.physics.source_terms) natural_logarithm() (in module openpnm.models.physics.source_terms) ncylinders_in_series() (in module openpnm.models.geometry.diffusive_size_factors) (in module openpnm.models.geometry.hydraulic_size_factors) NestedDict (class in openpnm.utils) Network (class in openpnm.network) network_from_csv() (in module openpnm.io) network_from_jsongraph() (in module openpnm.io) network_from_marock() (in module openpnm.io) network_from_networkx() (in module openpnm.io) network_from_pergeos() (in module openpnm.io) network_from_porespy() (in module openpnm.io) network_from_statoil() (in module openpnm.io) network_to_comsol() (in module openpnm.io) network_to_csv() (in module openpnm.io) network_to_jsongraph() (in module openpnm.io) network_to_networkx() (in module openpnm.io) network_to_pandas() (in module openpnm.io) network_to_pergeos() (in module openpnm.io) network_to_salome() (in module openpnm.io) network_to_stl() (in module openpnm.io) new_project() (Workspace method) normal() (in module openpnm.models.geometry.pore_size) (in module openpnm.models.geometry.throat_size) (in module openpnm.models.misc) normalize() (in module openpnm.models.misc) num_neighbors() (BodyCenteredCubic method) (Cubic method) (CubicTemplate method) (Delaunay method) (DelaunayVoronoiDual method) (Demo method) (FaceCenteredCubic method) (Network method) (Voronoi method) num_pores() (AdvectionDiffusion method) (Air method) (Algorithm method) (BinaryGas method) (BodyCenteredCubic method) (Cubic method) (CubicTemplate method) (Delaunay method) (DelaunayVoronoiDual method) (Demo method) (Domain method) (Drainage method) (FaceCenteredCubic method) (FickianDiffusion method) (FourierConduction method) (GasMixture method) (InvasionPercolation method) (LabelMixin method) (LiquidMixture method) (Mercury method) (Mixture method) (MultiPhase method) (Network method) (OhmicConduction method) (Phase method) (ReactiveTransport method) (Species method) (StandardGas method) (StandardGasMixture method) (StandardLiquid method) (StandardLiquidMixture method) (StokesFlow method) (TransientAdvectionDiffusion method) (TransientFickianDiffusion method) (TransientFourierConduction method) (TransientMultiPhysics method) (TransientReactiveTransport method) (Transport method) (Voronoi method) (Water method)

num_throats() (AdvectionDiffusion method) (Air method) (Algorithm method) (BinaryGas method) (BodyCenteredCubic method) (Cubic method) (CubicTemplate method) (Delaunay method) (DelaunayVoronoiDual method) (Demo method) (Domain method) (Drainage method) (FaceCenteredCubic method) (FickianDiffusion method) (FourierConduction method) (GasMixture method) (InvasionPercolation method) (LabelMixin method) (LiquidMixture method) (Mercury method) (Mixture method) (MultiPhase method) (Network method) (OhmicConduction method) (Phase method) (ReactiveTransport method) (Species method) (StandardGas method) (StandardGasMixture method) (StandardLiquid method) (StandardLiquidMixture method) (StokesFlow method) (TransientAdvectionDiffusion method) (TransientFickianDiffusion method) (TransientFourierConduction method) (TransientMultiPhysics method) (TransientReactiveTransport method) (Transport method) (Voronoi method) (Water method)

O

OhmicConduction (class in openpnm.algorithms) openpnm module, [1] openpnm.algorithms module openpnm.contrib module openpnm.core module openpnm.integrators module openpnm.io module openpnm.models module openpnm.models.collections module openpnm.models.collections.geometry module openpnm.models.collections.network module openpnm.models.collections.phase module openpnm.models.collections.phase.gas module openpnm.models.collections.phase.liquid module openpnm.models.collections.physics module openpnm.models.geometry module openpnm.models.geometry.conduit_lengths module openpnm.models.geometry.diffusive_size_factors module openpnm.models.geometry.hydraulic_size_factors module openpnm.models.geometry.pore_cross_sectional_area module openpnm.models.geometry.pore_seed module openpnm.models.geometry.pore_size module openpnm.models.geometry.pore_surface_area module openpnm.models.geometry.pore_volume module openpnm.models.geometry.throat_capillary_shape_factor module openpnm.models.geometry.throat_centroid module openpnm.models.geometry.throat_cross_sectional_area module openpnm.models.geometry.throat_endpoints module openpnm.models.geometry.throat_length module openpnm.models.geometry.throat_perimeter module openpnm.models.geometry.throat_seed module openpnm.models.geometry.throat_size module openpnm.models.geometry.throat_surface_area module

openpnm.models.geometry.throat_vector module openpnm.models.geometry.throat_volume module openpnm.models.misc module openpnm.models.network module openpnm.models.phase module openpnm.models.phase.critical_props module openpnm.models.phase.density module openpnm.models.phase.diffusivity module openpnm.models.phase.heat_capacity module openpnm.models.phase.misc module openpnm.models.phase.mixtures module openpnm.models.phase.partition_coefficient module openpnm.models.phase.surface_tension module openpnm.models.phase.thermal_conductivity module openpnm.models.phase.vapor_pressure module openpnm.models.phase.viscosity module openpnm.models.physics module openpnm.models.physics.ad_dif_conductance module openpnm.models.physics.capillary_pressure module openpnm.models.physics.diffusive_conductance module openpnm.models.physics.electrical_conductance module openpnm.models.physics.hydraulic_conductance module openpnm.models.physics.meniscus module openpnm.models.physics.multiphase module openpnm.models.physics.source_terms module openpnm.models.physics.thermal_conductance module openpnm.network module openpnm.phase module openpnm.solvers module openpnm.topotools module openpnm.utils module openpnm.visualization module ordinary_diffusion() (in module openpnm.models.physics.diffusive_conductance)

P

PardisoSpsolve (class in openpnm.solvers) ParserMixin (class in openpnm.core) pc_curve() (Drainage method) (InvasionPercolation method) pendular_ring() (in module openpnm.models.geometry.throat_volume) PETScLinearSolver (class in openpnm.solvers) Phase (class in openpnm.phase) plot_connections() (in module openpnm.visualization) plot_coordinates() (in module openpnm.visualization) plot_networkx() (in module openpnm.visualization) plot_notebook() (in module openpnm.visualization) plot_tutorial() (in module openpnm.visualization) plot_vispy() (in module openpnm.visualization) polynomial() (in module openpnm.models.misc) pop() (AdvectionDiffusion method) (Air method) (Algorithm method) (Base2 method) (BinaryGas method) (BodyCenteredCubic method) (Cubic method) (CubicTemplate method) (Delaunay method) (DelaunayVoronoiDual method) (Demo method) (Domain method) (Drainage method) (FaceCenteredCubic method) (FickianDiffusion method) (FourierConduction method) (GasMixture method) (HealthDict method) (InvasionPercolation method) (LiquidMixture method) (Mercury method) (Mixture method) (ModelsDict method) (ModelWrapper method) (MultiPhase method) (NestedDict method) (Network method) (OhmicConduction method) (Phase method) (PrintableDict method) (PrintableList method) (Project method) (ReactiveTransport method) (Species method) (StandardGas method) (StandardGasMixture method) (StandardLiquid method) (StandardLiquidMixture method) (StokesFlow method) (TransientAdvectionDiffusion method) (TransientFickianDiffusion method) (TransientFourierConduction method) (TransientMultiPhysics method) (TransientReactiveTransport method) (Transport method) (TypedList method) (TypedSet method) (Voronoi method) (Water method) (Workspace method) popitem() (AdvectionDiffusion method) (Air method) (Algorithm method) (Base2 method) (BinaryGas method) (BodyCenteredCubic method) (Cubic method) (CubicTemplate method) (Delaunay method) (DelaunayVoronoiDual method) (Demo method) (Domain method) (Drainage method) (FaceCenteredCubic method) (FickianDiffusion method) (FourierConduction method) (GasMixture method) (HealthDict method) (InvasionPercolation method) (LiquidMixture method) (Mercury method) (Mixture method) (ModelsDict method) (ModelWrapper method) (MultiPhase method) (NestedDict method) (Network method) (OhmicConduction method) (Phase method) (PrintableDict method) (ReactiveTransport method) (Species method) (StandardGas method) (StandardGasMixture method) (StandardLiquid method) (StandardLiquidMixture method) (StokesFlow method) (TransientAdvectionDiffusion method) (TransientFickianDiffusion method) (TransientFourierConduction method) (TransientMultiPhysics method) (TransientReactiveTransport method) (Transport method) (Voronoi method) (Water method) (Workspace method)

pore_coords() (in module openpnm.models.geometry.throat_centroid) pore_to_pore() (in module openpnm.models.geometry.throat_vector) pore_to_pore_distance() (in module openpnm.models.network) pores() (AdvectionDiffusion method) (Air method) (Algorithm method) (BinaryGas method) (BodyCenteredCubic method) (Cubic method) (CubicTemplate method) (Delaunay method) (DelaunayVoronoiDual method) (Demo method) (Domain method) (Drainage method) (FaceCenteredCubic method) (FickianDiffusion method) (FourierConduction method) (GasMixture method) (InvasionPercolation method) (LabelMixin method) (LiquidMixture method) (Mercury method) (Mixture method) (MultiPhase method) (Network method) (OhmicConduction method) (Phase method) (ReactiveTransport method) (Species method) (StandardGas method) (StandardGasMixture method) (StandardLiquid method) (StandardLiquidMixture method) (StokesFlow method) (TransientAdvectionDiffusion method) (TransientFickianDiffusion method) (TransientFourierConduction method) (TransientMultiPhysics method) (TransientReactiveTransport method) (Transport method) (Voronoi method) (Water method) power_law() (in module openpnm.models.physics.source_terms) print_hdf5() (in module openpnm.io) PrintableDict (class in openpnm.utils) PrintableList (class in openpnm.utils) product() (in module openpnm.models.misc) Project (class in openpnm.utils) project_to_csv() (in module openpnm.io) project_to_dict() (in module openpnm.io) project_to_hdf5() (in module openpnm.io) project_to_pandas() (in module openpnm.io) project_to_paraview() (in module openpnm.io) project_to_vtk() (in module openpnm.io) project_to_xdmf() (in module openpnm.io) props() (AdvectionDiffusion method) (Air method) (Algorithm method) (Base2 method) (BinaryGas method) (BodyCenteredCubic method) (Cubic method) (CubicTemplate method) (Delaunay method) (DelaunayVoronoiDual method) (Demo method) (Domain method) (Drainage method) (FaceCenteredCubic method) (FickianDiffusion method) (FourierConduction method) (GasMixture method) (InvasionPercolation method) (LiquidMixture method) (Mercury method) (Mixture method) (MultiPhase method) (Network method) (OhmicConduction method) (Phase method) (ReactiveTransport method) (Species method) (StandardGas method) (StandardGasMixture method) (StandardLiquid method) (StandardLiquidMixture method) (StokesFlow method) (TransientAdvectionDiffusion method) (TransientFickianDiffusion method) (TransientFourierConduction method) (TransientMultiPhysics method) (TransientReactiveTransport method) (Transport method) (Voronoi method) (Water method) purcell() (in module openpnm.models.physics.capillary_pressure) (in module openpnm.models.physics.meniscus) PyamgRugeStubenSolver (class in openpnm.solvers) pyramids_and_cuboids (in module openpnm.models.collections.geometry) pyramids_and_cuboids() (in module openpnm.models.geometry.conduit_lengths) (in module openpnm.models.geometry.diffusive_size_factors) (in module openpnm.models.geometry.hydraulic_size_factors) (in module openpnm.models.geometry.throat_length)

R

random() (in module openpnm.models.geometry.pore_seed) (in module openpnm.models.geometry.pore_size) (in module openpnm.models.geometry.throat_seed) (in module openpnm.models.geometry.throat_size) (in module openpnm.models.misc) rate() (AdvectionDiffusion method) (FickianDiffusion method) (FourierConduction method) (OhmicConduction method) (ReactiveTransport method) (StokesFlow method) (TransientAdvectionDiffusion method) (TransientFickianDiffusion method) (TransientFourierConduction method) (TransientReactiveTransport method) (Transport method) ReactiveTransport (class in openpnm.algorithms) rectangle() (in module openpnm.models.geometry.throat_cross_sectional_area) (in module openpnm.models.geometry.throat_perimeter) (in module openpnm.models.geometry.throat_surface_area) (in module openpnm.models.geometry.throat_volume) reduce_coordination() (in module openpnm.topotools) reflect_base_points() (in module openpnm.topotools) regenerate_models() (Air method) (BinaryGas method) (BodyCenteredCubic method) (Cubic method) (CubicTemplate method) (Delaunay method) (DelaunayVoronoiDual method) (Demo method) (Domain method) (FaceCenteredCubic method) (GasMixture method) (LiquidMixture method) (Mercury method) (Mixture method) (ModelsMixin2 method) (MultiPhase method) (Network method) (Phase method) (Species method) (StandardGas method) (StandardGasMixture method) (StandardLiquid method) (StandardLiquidMixture method) (Voronoi method) (Water method) remove() (PrintableList method) (Project method) (TypedList method) (TypedSet method)

remove_comp() (BinaryGas method) (GasMixture method) (LiquidMixture method) (Mixture method) (StandardGasMixture method) (StandardLiquidMixture method) reset() (Drainage method) (InvasionPercolation method) reverse() (PrintableList method) (Project method) (TypedList method) reversed_throats() (in module openpnm.models.network) rotate_coords() (in module openpnm.topotools) run() (AdvectionDiffusion method) (Drainage method) (FickianDiffusion method) (FourierConduction method) (InvasionPercolation method) (OhmicConduction method) (ReactiveTransport method) (StokesFlow method) (TransientAdvectionDiffusion method) (TransientFickianDiffusion method) (TransientFourierConduction method) (TransientMultiPhysics method) (TransientReactiveTransport method) (Transport method) run_model() (Air method) (BinaryGas method) (BodyCenteredCubic method) (Cubic method) (CubicTemplate method) (Delaunay method) (DelaunayVoronoiDual method) (Demo method) (Domain method) (FaceCenteredCubic method) (GasMixture method) (LiquidMixture method) (Mercury method) (Mixture method) (ModelsMixin2 method) (MultiPhase method) (Network method) (Phase method) (Species method) (StandardGas method) (StandardGasMixture method) (StandardLiquid method) (StandardLiquidMixture method) (Voronoi method) (Water method)

S

salinity() (in module openpnm.models.phase.mixtures) sanitize_dict() (in module openpnm.utils) save_docstring() (Docorator method) save_project() (Workspace method) save_workspace() (Workspace method) scaled() (in module openpnm.models.misc) ScipyCG (class in openpnm.solvers) ScipyRK45 (class in openpnm.integrators) ScipySpsolve (class in openpnm.solvers) series_resistors() (in module openpnm.models.physics.electrical_conductance) (in module openpnm.models.physics.thermal_conductance) set_BC() (AdvectionDiffusion method) (Algorithm method) (Drainage method) (FickianDiffusion method) (FourierConduction method) (InvasionPercolation method) (OhmicConduction method) (ReactiveTransport method) (StokesFlow method) (TransientAdvectionDiffusion method) (TransientFickianDiffusion method) (TransientFourierConduction method) (TransientMultiPhysics method) (TransientReactiveTransport method) (Transport method) set_binary_partition_coef() (MultiPhase method) set_inlet_BC() (Drainage method) (InvasionPercolation method) set_label() (AdvectionDiffusion method) (Air method) (Algorithm method) (BinaryGas method) (BodyCenteredCubic method) (Cubic method) (CubicTemplate method) (Delaunay method) (DelaunayVoronoiDual method) (Demo method) (Domain method) (Drainage method) (FaceCenteredCubic method) (FickianDiffusion method) (FourierConduction method) (GasMixture method) (InvasionPercolation method) (LabelMixin method) (LiquidMixture method) (Mercury method) (Mixture method) (MultiPhase method) (Network method) (OhmicConduction method) (Phase method) (ReactiveTransport method) (Species method) (StandardGas method) (StandardGasMixture method) (StandardLiquid method) (StandardLiquidMixture method) (StokesFlow method) (TransientAdvectionDiffusion method) (TransientFickianDiffusion method) (TransientFourierConduction method) (TransientMultiPhysics method) (TransientReactiveTransport method) (Transport method) (Voronoi method) (Water method) set_mpl_style() (in module openpnm.visualization) set_occupancy() (MultiPhase method) set_outflow_BC() (AdvectionDiffusion method) (TransientAdvectionDiffusion method) set_outlet_BC() (Drainage method) (InvasionPercolation method) set_rate_BC() (AdvectionDiffusion method) (FickianDiffusion method) (FourierConduction method) (OhmicConduction method) (ReactiveTransport method) (StokesFlow method) (TransientAdvectionDiffusion method) (TransientFickianDiffusion method) (TransientFourierConduction method) (TransientReactiveTransport method) (Transport method) set_source() (AdvectionDiffusion method) (FickianDiffusion method) (FourierConduction method) (OhmicConduction method) (ReactiveTransport method) (StokesFlow method) (TransientAdvectionDiffusion method) (TransientFickianDiffusion method) (TransientFourierConduction method) (TransientReactiveTransport method) set_value_BC() (AdvectionDiffusion method) (FickianDiffusion method) (FourierConduction method) (OhmicConduction method) (ReactiveTransport method) (StokesFlow method) (TransientAdvectionDiffusion method) (TransientFickianDiffusion method) (TransientFourierConduction method) (TransientReactiveTransport method) (Transport method)

setdefault() (AdvectionDiffusion method) (Air method) (Algorithm method) (Base2 method) (BinaryGas method) (BodyCenteredCubic method) (Cubic method) (CubicTemplate method) (Delaunay method) (DelaunayVoronoiDual method) (Demo method) (Domain method) (Drainage method) (FaceCenteredCubic method) (FickianDiffusion method) (FourierConduction method) (GasMixture method) (HealthDict method) (InvasionPercolation method) (LiquidMixture method) (Mercury method) (Mixture method) (ModelsDict method) (ModelWrapper method) (MultiPhase method) (NestedDict method) (Network method) (OhmicConduction method) (Phase method) (PrintableDict method) (ReactiveTransport method) (Species method) (StandardGas method) (StandardGasMixture method) (StandardLiquid method) (StandardLiquidMixture method) (StokesFlow method) (TransientAdvectionDiffusion method) (TransientFickianDiffusion method) (TransientFourierConduction method) (TransientMultiPhysics method) (TransientReactiveTransport method) (Transport method) (Voronoi method) (Water method) (Workspace method) SettingsAttr (class in openpnm.utils) shear_coords() (in module openpnm.topotools) sinusoidal() (in module openpnm.models.physics.meniscus) site_percolation() (in module openpnm.topotools) solve() (BaseSolver method) (DirectSolver method) (IterativeSolver method) (PardisoSpsolve method) (PETScLinearSolver method) (PyamgRugeStubenSolver method) (ScipyCG method) (ScipyRK45 method) (ScipySpsolve method) sort() (PrintableList method) (Project method) (TypedList method) spatially_correlated() (in module openpnm.models.geometry.pore_seed) Species (class in openpnm.phase) sphere() (in module openpnm.models.geometry.pore_cross_sectional_area) (in module openpnm.models.geometry.pore_surface_area) (in module openpnm.models.geometry.pore_volume) spheres_and_cylinders (in module openpnm.models.collections.geometry) spheres_and_cylinders() (in module openpnm.models.geometry.conduit_lengths) (in module openpnm.models.geometry.diffusive_size_factors) (in module openpnm.models.geometry.hydraulic_size_factors) (in module openpnm.models.geometry.throat_endpoints) (in module openpnm.models.geometry.throat_length) square() (in module openpnm.models.geometry.pore_cross_sectional_area) (in module openpnm.models.geometry.pore_surface_area) (in module openpnm.models.geometry.pore_volume) squares_and_rectangles (in module openpnm.models.collections.geometry) squares_and_rectangles() (in module openpnm.models.geometry.conduit_lengths) (in module openpnm.models.geometry.diffusive_size_factors) (in module openpnm.models.geometry.hydraulic_size_factors) (in module openpnm.models.geometry.throat_length) standard (in module openpnm.models.collections.physics) standard_kinetics() (in module openpnm.models.physics.source_terms) StandardGas (class in openpnm.phase) StandardGasMixture (class in openpnm.phase) StandardLiquid (class in openpnm.phase) StandardLiquidMixture (class in openpnm.phase) stitch() (in module openpnm.topotools) StokesFlow (class in openpnm.algorithms) struct_to_dict() (in module openpnm.utils) summation() (in module openpnm.models.misc) symmetric_difference() (TypedSet method) symmetric_difference_update() (TypedSet method)

T

taylor_aris_diffusion() (in module openpnm.models.physics.diffusive_conductance) template_cylinder_annulus() (in module openpnm.topotools) template_sphere_shell() (in module openpnm.topotools) throats() (AdvectionDiffusion method) (Air method) (Algorithm method) (BinaryGas method) (BodyCenteredCubic method) (Cubic method) (CubicTemplate method) (Delaunay method) (DelaunayVoronoiDual method) (Demo method) (Domain method) (Drainage method) (FaceCenteredCubic method) (FickianDiffusion method) (FourierConduction method) (GasMixture method) (InvasionPercolation method) (LabelMixin method) (LiquidMixture method) (Mercury method) (Mixture method) (MultiPhase method) (Network method) (OhmicConduction method) (Phase method) (ReactiveTransport method) (Species method) (StandardGas method) (StandardGasMixture method) (StandardLiquid method) (StandardLiquidMixture method) (StokesFlow method) (TransientAdvectionDiffusion method) (TransientFickianDiffusion method) (TransientFourierConduction method) (TransientMultiPhysics method) (TransientReactiveTransport method) (Transport method) (Voronoi method) (Water method) to_dict() (NestedDict method) to_indices() (AdvectionDiffusion method) (Air method) (Algorithm method) (Base2 method) (BinaryGas method) (BodyCenteredCubic method) (Cubic method) (CubicTemplate method) (Delaunay method) (DelaunayVoronoiDual method) (Demo method) (Domain method) (Drainage method) (FaceCenteredCubic method) (FickianDiffusion method) (FourierConduction method) (GasMixture method) (InvasionPercolation method) (LiquidMixture method) (Mercury method) (Mixture method) (MultiPhase method) (Network method) (OhmicConduction method) (Phase method) (ReactiveTransport method) (Species method) (StandardGas method) (StandardGasMixture method) (StandardLiquid method) (StandardLiquidMixture method) (StokesFlow method) (TransientAdvectionDiffusion method) (TransientFickianDiffusion method) (TransientFourierConduction method) (TransientMultiPhysics method) (TransientReactiveTransport method) (Transport method) (Voronoi method) (Water method)

to_mask() (AdvectionDiffusion method) (Air method) (Algorithm method) (Base2 method) (BinaryGas method) (BodyCenteredCubic method) (Cubic method) (CubicTemplate method) (Delaunay method) (DelaunayVoronoiDual method) (Demo method) (Domain method) (Drainage method) (FaceCenteredCubic method) (FickianDiffusion method) (FourierConduction method) (GasMixture method) (InvasionPercolation method) (LiquidMixture method) (Mercury method) (Mixture method) (MultiPhase method) (Network method) (OhmicConduction method) (Phase method) (ReactiveTransport method) (Species method) (StandardGas method) (StandardGasMixture method) (StandardLiquid method) (StandardLiquidMixture method) (StokesFlow method) (TransientAdvectionDiffusion method) (TransientFickianDiffusion method) (TransientFourierConduction method) (TransientMultiPhysics method) (TransientReactiveTransport method) (Transport method) (Voronoi method) (Water method) TransientAdvectionDiffusion (class in openpnm.algorithms) TransientFickianDiffusion (class in openpnm.algorithms) TransientFourierConduction (class in openpnm.algorithms) TransientMultiPhysics (class in openpnm.contrib) TransientReactiveTransport (class in openpnm.algorithms) Transport (class in openpnm.algorithms) trapezoids_and_rectangles (in module openpnm.models.collections.geometry) trapezoids_and_rectangles() (in module openpnm.models.geometry.conduit_lengths) (in module openpnm.models.geometry.diffusive_size_factors) (in module openpnm.models.geometry.hydraulic_size_factors) (in module openpnm.models.geometry.throat_length) tri_to_am() (in module openpnm.topotools) trim() (in module openpnm.topotools) trim_disconnected_clusters() (in module openpnm.topotools) TypedList (class in openpnm.utils) TypedMixin (class in openpnm.utils) TypedSet (class in openpnm.utils)

U

union() (TypedSet method) unravel() (NestedDict method) update() (AdvectionDiffusion method) (Air method) (Algorithm method) (Base2 method) (BinaryGas method) (BodyCenteredCubic method) (Cubic method) (CubicTemplate method) (Delaunay method) (DelaunayVoronoiDual method) (Demo method) (Domain method) (Drainage method) (FaceCenteredCubic method) (FickianDiffusion method) (FourierConduction method) (GasMixture method) (HealthDict method) (InvasionPercolation method) (LiquidMixture method) (Mercury method) (Mixture method) (ModelsDict method) (ModelWrapper method) (MultiPhase method) (NestedDict method) (Network method) (OhmicConduction method) (Phase method) (PrintableDict method) (ReactiveTransport method) (Species method) (StandardGas method) (StandardGasMixture method) (StandardLiquid method) (StandardLiquidMixture method) (StokesFlow method) (TransientAdvectionDiffusion method) (TransientFickianDiffusion method) (TransientFourierConduction method) (TransientMultiPhysics method) (TransientReactiveTransport method) (Transport method) (TypedSet method) (Voronoi method) (Water method) (Workspace method)

V

values() (AdvectionDiffusion method) (Air method) (Algorithm method) (Base2 method) (BinaryGas method) (BodyCenteredCubic method) (Cubic method) (CubicTemplate method) (Delaunay method) (DelaunayVoronoiDual method) (Demo method) (Domain method) (Drainage method) (FaceCenteredCubic method) (FickianDiffusion method) (FourierConduction method) (GasMixture method) (HealthDict method) (InvasionPercolation method) (LiquidMixture method) (Mercury method) (Mixture method) (ModelsDict method) (ModelWrapper method) (MultiPhase method) (NestedDict method) (Network method) (OhmicConduction method) (Phase method) (PrintableDict method) (ReactiveTransport method) (Species method) (StandardGas method) (StandardGasMixture method) (StandardLiquid method) (StandardLiquidMixture method) (StokesFlow method) (TransientAdvectionDiffusion method) (TransientFickianDiffusion method) (TransientFourierConduction method) (TransientMultiPhysics method) (TransientReactiveTransport method) (Transport method) (Voronoi method) (Water method) (Workspace method)

valvatne_blunt() (in module openpnm.models.physics.hydraulic_conductance) vor_to_am() (in module openpnm.topotools) Voronoi (class in openpnm.network)

W

washburn() (in module openpnm.models.physics.capillary_pressure) Water (class in openpnm.phase) water (in module openpnm.models.collections.phase) water_correlation() (in module openpnm.models.phase.density) (in module openpnm.models.phase.surface_tension) (in module openpnm.models.phase.thermal_conductivity) (in module openpnm.models.phase.vapor_pressure) (in module openpnm.models.phase.viscosity)

weibull() (in module openpnm.models.geometry.pore_size) (in module openpnm.models.geometry.throat_size) (in module openpnm.models.misc) with_indent() (Docorator method) with_indents() (Docorator method) Workspace (class in openpnm.utils)

X

x() (LiquidMixture method) (StandardLiquidMixture method)

Y

y() (BinaryGas method) (GasMixture method) (StandardGasMixture method)