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Module Reference
Examples
Issue Tracker
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utils
core
- Base2
- Domain
- LabelMixin
  - filter_by_label
  - labels
  - num_pores
  - num_throats
  - pores
  - set_label
  - throats
- ModelWrapper
- ModelsDict
- ModelsMixin2
- ParserMixin
network
phase
- Air
- BinaryGas
  - add_comp
  - add_model
  - add_model_collection
  - check_mixture_health
  - filter_by_label
  - get_comp_vals
  - get_conduit_data
  - get_mix_vals
  - interpolate_data
  - labels
  - num_pores
  - num_throats
  - pores
  - props
  - regenerate_models
  - remove_comp
  - run_model
  - set_label
  - throats
  - to_indices
  - to_mask
  - y
- GasMixture
  - add_comp
  - add_model
  - add_model_collection
  - check_mixture_health
  - filter_by_label
  - get_comp_vals
  - get_conduit_data
  - get_mix_vals
  - interpolate_data
  - labels
  - num_pores
  - num_throats
  - pores
  - props
  - regenerate_models
  - remove_comp
  - run_model
  - set_label
  - throats
  - to_indices
  - to_mask
  - y
- LiquidMixture
  - add_comp
  - add_model
  - add_model_collection
  - check_mixture_health
  - filter_by_label
  - get_comp_vals
  - get_conduit_data
  - get_mix_vals
  - interpolate_data
  - labels
  - num_pores
  - num_throats
  - pores
  - props
  - regenerate_models
  - remove_comp
  - run_model
  - set_label
  - throats
  - to_indices
  - to_mask
  - x
- Mercury
- Mixture
- Phase
- Species
- StandardGas
- StandardGasMixture
  - add_comp
  - add_model
  - add_model_collection
  - check_mixture_health
  - filter_by_label
  - get_comp_vals
  - get_conduit_data
  - get_mix_vals
  - interpolate_data
  - labels
  - num_pores
  - num_throats
  - pores
  - props
  - regenerate_models
  - remove_comp
  - run_model
  - set_label
  - throats
  - to_indices
  - to_mask
  - y
- StandardLiquid
- StandardLiquidMixture
  - add_comp
  - add_model
  - add_model_collection
  - check_mixture_health
  - filter_by_label
  - get_comp_vals
  - get_conduit_data
  - get_mix_vals
  - interpolate_data
  - labels
  - num_pores
  - num_throats
  - pores
  - props
  - regenerate_models
  - remove_comp
  - run_model
  - set_label
  - throats
  - to_indices
  - to_mask
  - x
- Water
models
solvers
- BaseSolver
  - solve
- DirectSolver
  - solve
- IterativeSolver
  - solve
- PETScLinearSolver
  - solve
- PardisoSpsolve
  - solve
- PyamgRugeStubenSolver
  - solve
- ScipyCG
  - solve
- ScipySpsolve
  - solve
integrators
- Integrator
- ScipyRK45
  - solve
algorithms
- AdvectionDiffusion
  - clear_BCs
  - clear_rate_BCs
  - clear_value_BCs
  - filter_by_label
  - get_conduit_data
  - interpolate_data
  - labels
  - num_pores
  - num_throats
  - pores
  - props
  - rate
  - run
  - set_BC
  - set_label
  - set_outflow_BC
  - set_rate_BC
  - set_source
  - set_value_BC
  - throats
  - to_indices
  - to_mask
- Algorithm
  - clear_BCs
  - filter_by_label
  - get_conduit_data
  - interpolate_data
  - labels
  - num_pores
  - num_throats
  - pores
  - props
  - set_BC
  - set_label
  - throats
  - to_indices
  - to_mask
- Drainage
  - apply_trapping
  - clear_BCs
  - filter_by_label
  - get_conduit_data
  - interpolate_data
  - labels
  - num_pores
  - num_throats
  - pores
  - props
  - reset
  - run
  - set_BC
  - set_inlet_BC
  - set_label
  - set_outlet_BC
  - throats
  - to_indices
  - to_mask
- FickianDiffusion
  - clear_BCs
  - clear_rate_BCs
  - clear_value_BCs
  - filter_by_label
  - get_conduit_data
  - interpolate_data
  - labels
  - num_pores
  - num_throats
  - pores
  - props
  - rate
  - run
  - set_BC
  - set_label
  - set_rate_BC
  - set_source
  - set_value_BC
  - throats
  - to_indices
  - to_mask
- FourierConduction
  - clear_BCs
  - clear_rate_BCs
  - clear_value_BCs
  - filter_by_label
  - get_conduit_data
  - interpolate_data
  - labels
  - num_pores
  - num_throats
  - pores
  - props
  - rate
  - run
  - set_BC
  - set_label
  - set_rate_BC
  - set_source
  - set_value_BC
  - throats
  - to_indices
  - to_mask
- InvasionPercolation
  - apply_trapping
  - clear_BCs
  - filter_by_label
  - get_conduit_data
  - interpolate_data
  - labels
  - num_pores
  - num_throats
  - pc_curve
  - pores
  - props
  - run
  - set_BC
  - set_inlet_BC
  - set_label
  - set_outlet_BC
  - throats
  - to_indices
  - to_mask
- OhmicConduction
  - clear_BCs
  - clear_rate_BCs
  - clear_value_BCs
  - filter_by_label
  - get_conduit_data
  - interpolate_data
  - labels
  - num_pores
  - num_throats
  - pores
  - props
  - rate
  - run
  - set_BC
  - set_label
  - set_rate_BC
  - set_source
  - set_value_BC
  - throats
  - to_indices
  - to_mask
- ReactiveTransport
  - clear_BCs
  - clear_rate_BCs
  - clear_value_BCs
  - filter_by_label
  - get_conduit_data
  - interpolate_data
  - labels
  - num_pores
  - num_throats
  - pores
  - props
  - rate
  - run
  - set_BC
  - set_label
  - set_rate_BC
  - set_source
  - set_value_BC
  - throats
  - to_indices
  - to_mask
- StokesFlow
  - clear_BCs
  - clear_rate_BCs
  - clear_value_BCs
  - filter_by_label
  - get_conduit_data
  - interpolate_data
  - labels
  - num_pores
  - num_throats
  - pores
  - props
  - rate
  - run
  - set_BC
  - set_label
  - set_rate_BC
  - set_source
  - set_value_BC
  - throats
  - to_indices
  - to_mask
- TransientAdvectionDiffusion
  - clear_BCs
  - clear_rate_BCs
  - clear_value_BCs
  - filter_by_label
  - get_conduit_data
  - interpolate_data
  - labels
  - num_pores
  - num_throats
  - pores
  - props
  - rate
  - run
  - set_BC
  - set_label
  - set_outflow_BC
  - set_rate_BC
  - set_source
  - set_value_BC
  - throats
  - to_indices
  - to_mask
- TransientFickianDiffusion
  - clear_BCs
  - clear_rate_BCs
  - clear_value_BCs
  - filter_by_label
  - get_conduit_data
  - interpolate_data
  - labels
  - num_pores
  - num_throats
  - pores
  - props
  - rate
  - run
  - set_BC
  - set_label
  - set_rate_BC
  - set_source
  - set_value_BC
  - throats
  - to_indices
  - to_mask
- TransientFourierConduction
  - clear_BCs
  - clear_rate_BCs
  - clear_value_BCs
  - filter_by_label
  - get_conduit_data
  - interpolate_data
  - labels
  - num_pores
  - num_throats
  - pores
  - props
  - rate
  - run
  - set_BC
  - set_label
  - set_rate_BC
  - set_source
  - set_value_BC
  - throats
  - to_indices
  - to_mask
- TransientReactiveTransport
  - clear_BCs
  - clear_rate_BCs
  - clear_value_BCs
  - filter_by_label
  - get_conduit_data
  - interpolate_data
  - labels
  - num_pores
  - num_throats
  - pores
  - props
  - rate
  - run
  - set_BC
  - set_label
  - set_rate_BC
  - set_source
  - set_value_BC
  - throats
  - to_indices
  - to_mask
- Transport
  - clear_BCs
  - clear_rate_BCs
  - clear_value_BCs
  - filter_by_label
  - get_conduit_data
  - interpolate_data
  - labels
  - num_pores
  - num_throats
  - pores
  - props
  - rate
  - run
  - set_BC
  - set_label
  - set_rate_BC
  - set_value_BC
  - throats
  - to_indices
  - to_mask
topotools
io
contrib
- multiphase_diffusion
- MultiPhase
- TransientMultiPhysics
  - clear_BCs
  - filter_by_label
  - get_conduit_data
  - interpolate_data
  - labels
  - num_pores
  - num_throats
  - pores
  - props
  - run
  - set_BC
  - set_label
  - throats
  - to_indices
  - to_mask
visualization

Module Reference
InvasionPercolation
run

run#

InvasionPercolation.run()[source]#: Performs the algorithm for the given number of steps

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InvasionPercolation.run()

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