Source code for openpnm.io._salome

import logging
import numpy as np
from openpnm.io import _parse_filename


logger = logging.getLogger(__name__)


_header = """
import numpy as np
def pnm_2_salome(cylinder_head, cylinder_tail, cylinder_r,
                 sphere_c, sphere_r, explicit=False):
    import numpy as np
    import math
    import GEOM
    import SALOMEDS
    import salome
    from salome.geom import geomBuilder
    salome.salome_init()
    geompy = geomBuilder.New()
    O = geompy.MakeVertex(0, 0, 0)
    OX = geompy.MakeVectorDXDYDZ(1, 0, 0)
    OY = geompy.MakeVectorDXDYDZ(0, 1, 0)
    OZ = geompy.MakeVectorDXDYDZ(0, 0, 1)
    s = len(sphere_r)
    c = len(cylinder_r)
    vertex_id = 0
    fuse_list = np.array([])
    for i in range(s):
        vertex_s = geompy.MakeVertex(sphere_c[i, 0], sphere_c[i, 1],
                                     sphere_c[i, 2])
        sphere = geompy.MakeSpherePntR(vertex_s, sphere_r[i])
        if explicit:
            geompy.addToStudy(vertex_s, "Vertex_{}".format(vertex_id))
            geompy.addToStudy(sphere, "Sphere_{}".format(i))
        vertex_id += 1
        fuse_list = np.append(fuse_list, sphere)
    for i in range(c):
        vertex_c1 = geompy.MakeVertex(cylinder_head[i, 0], cylinder_head[i, 1],
                                      cylinder_head[i, 2])
        vertex_c2 = geompy.MakeVertex(cylinder_tail[i, 0], cylinder_tail[i, 1],
                                      cylinder_tail[i, 2])
        line = geompy.MakeLineTwoPnt(vertex_c1, vertex_c2)
        length = abs(np.linalg.norm(cylinder_head[i] - cylinder_tail[i]))
        cylinder = geompy.MakeCylinder(vertex_c1, line, cylinder_r[i], length)
        if explicit:
            geompy.addToStudy(vertex_c1, "Vertex_{}".format(vertex_id))
        vertex_id += 1
        if explicit:
            geompy.addToStudy(vertex_c2, "Vertex_{}".format(vertex_id))
        vertex_id += 1
        if explicit:
            geompy.addToStudy(line, "Line_{}".format(i))
            geompy.addToStudy(cylinder, "Cylinder_{}".format(i))
        fuse_list = np.append(fuse_list, cylinder)
    fuse = geompy.MakeFuseList(list(fuse_list), True, True)
    geompy.addToStudy(fuse, 'network')
    geompy.addToStudy( O, 'O' )
    geompy.addToStudy( OX, 'OX' )
    geompy.addToStudy( OY, 'OY' )
    geompy.addToStudy( OZ, 'OZ' )
    if salome.sg.hasDesktop():
        salome.sg.updateObjBrowser()

    """
_footer = """
pnm_2_salome(cylinder_head, cylinder_tail, cylinder_r,
             sphere_c, sphere_r, explicit=explicit)

    """



[docs]
def network_to_salome(network, filename=None, explicit=False):
    r"""
    Saves the network data and writes a Salome .py instruction file.

    Parameters
    ----------
    network : Network
        The network containing the desired data

    Notes
    -----
    This method only saves the data, not any of the pore-scale models
    or other attributes. To save an actual OpenPNM Project use the
    ``Workspace`` object.

    """
    # Temporarily add endpoints to network so STL class works
    network["throat.endpoints.head"] = network.coords[network.conns[:, 0]]
    network["throat.endpoints.tail"] = network.coords[network.conns[:, 1]]

    filename = network.name if filename is None else filename
    filename = _parse_filename(filename=filename, ext='py')

    f = open(filename, 'w')
    f.write(_header+'\n')

    x = network['throat.endpoints.head']
    s = str(x.shape)
    f.write('cylinder_head = np.array([')
    np.savetxt(f, X=[x.flatten()], fmt='%.18e', delimiter=',', newline='')
    f.write('])\n')
    f.write('cylinder_head = np.reshape(cylinder_head, '+s+')\n')

    x = network['throat.endpoints.tail']
    s = str(x.shape)
    f.write('cylinder_tail = np.array([')
    np.savetxt(f, X=[x.flatten()], fmt='%.18e', delimiter=',', newline='')
    f.write('])\n')
    f.write('cylinder_tail = np.reshape(cylinder_tail, '+s+')\n')

    x = network['throat.diameter']/2
    s = str(x.shape)
    f.write('cylinder_r = np.array([')
    np.savetxt(f, X=[x.flatten()], fmt='%.18e', delimiter=',', newline='')
    f.write('])\n')
    f.write('cylinder_r = np.reshape(cylinder_r, '+s+')\n')

    x = network['pore.coords']
    s = str(x.shape)
    f.write('sphere_c = np.array([')
    np.savetxt(f, X=[x.flatten()], fmt='%.18e', delimiter=',', newline='')
    f.write('])\n')
    f.write('sphere_c = np.reshape(sphere_c, '+s+')\n')

    x = network['pore.diameter']/2
    s = str(x.shape)
    f.write('sphere_r = np.array([')
    np.savetxt(f, X=[x.flatten()], fmt='%.18e', delimiter=',', newline='')
    f.write('])\n')
    f.write('sphere_r = np.reshape(sphere_r, '+s+')\n')

    f.write('explicit = '+str(explicit))

    f.write(_footer)

    f.close()